3D structure

PDB id
3G6E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
ACGAAU*AGACU
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3G6E_018 not in the Motif Atlas
Geometric match to IL_4V9F_018
Geometric discrepancy: 0.0608
The information below is about IL_4V9F_018
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_97631.1
Basepair signature
cWW-L-R-L-R-L-tHS-cWW
Number of instances in this motif group
1

Unit IDs

3G6E|1|0|A|562
3G6E|1|0|C|563
3G6E|1|0|G|564
3G6E|1|0|A|565
3G6E|1|0|A|566
3G6E|1|0|U|567
*
3G6E|1|0|A|591
3G6E|1|0|G|592
3G6E|1|0|A|593
3G6E|1|0|C|594
3G6E|1|0|U|595

Current chains

Chain 0
23S ribosomal RNA

Nearby chains

Chain W
50S ribosomal protein L30P
Chain Y
50S ribosomal protein L32e

Coloring options:


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