IL_3G6E_040

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUAAGUG*CUCAAA

Length

13 nucleotides

Bulged bases

3G6E|1|0|C|1245, 3G6E|1|0|A|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3G6E_040 not in the Motif Atlas

Homologous match to IL_4V9F_040

Geometric discrepancy: 0.1453

The information below is about IL_4V9F_040

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

3G6E|1|0|U|1115
3G6E|1|0|U|1116
3G6E|1|0|A|1117
3G6E|1|0|A|1118
3G6E|1|0|G|1119
3G6E|1|0|U|1120
3G6E|1|0|G|1121
*
3G6E|1|0|C|1243
3G6E|1|0|U|1244
3G6E|1|0|C|1245
3G6E|1|0|A|1246
3G6E|1|0|A|1247
3G6E|1|0|A|1248

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P