IL_3G6E_054

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGUCG*UCAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3G6E_054 not in the Motif Atlas

Homologous match to IL_4V9F_055

Geometric discrepancy: 0.0512

The information below is about IL_4V9F_055

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

3G6E|1|0|G|1542
3G6E|1|0|G|1543
3G6E|1|0|U|1544
3G6E|1|0|C|1545
3G6E|1|0|G|1546
*
3G6E|1|0|U|1639
3G6E|1|0|C|1640
3G6E|1|0|A|1641
3G6E|1|0|A|1642
3G6E|1|0|C|1643

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19e