IL_3G6E_070

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

3G6E|1|0|G|1979, 3G6E|1|0|U|1985, 3G6E|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3G6E_070 not in the Motif Atlas

Homologous match to IL_4V9F_071

Geometric discrepancy: 0.0397

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

3G6E|1|0|C|1975
3G6E|1|0|G|1976
3G6E|1|0|U|1977
3G6E|1|0|A|1978
3G6E|1|0|G|1979
3G6E|1|0|U|1980
3G6E|1|0|A|1981
3G6E|1|0|C|1982
3G6E|1|0|C|1983
3G6E|1|0|U|1984
3G6E|1|0|U|1985
3G6E|1|0|G|1986
*
3G6E|1|0|C|2002
3G6E|1|0|U|2003
3G6E|1|0|U|2004
3G6E|1|0|G|2005

Current chains

Chain 0

23S ribosomal RNA

Nearby chains