IL_3G78_003

3D structure

PDB id

3G78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insight into group II intron catalysis from revised crystal structure

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAAG*UGAAGGAAG

Length

13 nucleotides

Bulged bases

3G78|1|A|A|106, 3G78|1|A|G|107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29949.1

Basepair signature

cWW-R-cSW-R-R-tHS-cWW

Number of instances in this motif group

1

Unit IDs

3G78|1|A|C|76
3G78|1|A|A|77
3G78|1|A|A|78
3G78|1|A|G|79
*
3G78|1|A|U|103
3G78|1|A|G|104
3G78|1|A|A|105
3G78|1|A|A|106
3G78|1|A|G|107
3G78|1|A|G|108
3G78|1|A|A|109
3G78|1|A|A|110
3G78|1|A|G|111

Current chains

Chain A

Group II intron

Nearby chains

Chain Z

Ligated EXON product