IL_3G78_006

3D structure

PDB id

3G78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insight into group II intron catalysis from revised crystal structure

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AUAUGAGG*UAAAU

Length

13 nucleotides

Bulged bases

3G78|1|A|U|152, 3G78|1|A|A|223

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41009.1

Basepair signature

cWW-L-L-L-tSS-tHW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

3G78|1|A|A|149
3G78|1|A|U|150
3G78|1|A|A|151
3G78|1|A|U|152
3G78|1|A|G|153
3G78|1|A|A|154
3G78|1|A|G|155
3G78|1|A|G|156
*
3G78|1|A|U|221
3G78|1|A|A|222
3G78|1|A|A|223
3G78|1|A|A|224
3G78|1|A|U|225

Current chains

Chain A

Group II intron

Nearby chains

Chain Z

Ligated EXON product