IL_3GLP_010

3D structure

PDB id

3GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

1.23 A resolution X-ray structure of (GCUGCUGC)2

Experimental method

X-RAY DIFFRACTION

Resolution

1.23 Å

Loop

Sequence

CUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3GLP_010 not in the Motif Atlas

Geometric match to IL_4E48_002

Geometric discrepancy: 0.0988

The information below is about IL_4E48_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

3GLP|1|D|C|2
3GLP|1|D|U|3
3GLP|1|D|G|4
*
3GLP|1|C|C|5||A
3GLP|1|C|U|6||A
3GLP|1|C|G|7

Current chains

Chain C

5'-R(*GP*CP*UP*GP*CP*UP*GP*C)-3'

Chain D

5'-R(*GP*CP*UP*GP*CP*UP*GP*C)-3'

Nearby chains

Chain E

5'-R(*GP*CP*UP*GP*CP*UP*GP*C)-3'