IL_3GS8_002
3D structure
- PDB id
- 3GS8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- An all-RNA hairpin ribozyme A38N1dA38 variant with a transition-state mimic substrate strand
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- GAGAAACAC*GGUACAUUACC
- Length
- 20 nucleotides
- Bulged bases
- 3GS8|1|D|C|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3GS8_002 not in the Motif Atlas
- Geometric match to IL_3GS5_002
- Geometric discrepancy: 0.0548
- The information below is about IL_3GS5_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60797.1
- Basepair signature
- cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
3GS8|1|C|G|19
3GS8|1|C|A|20
3GS8|1|C|G|21
3GS8|1|C|A|22
3GS8|1|C|A|23
3GS8|1|C|A|24
3GS8|1|C|C|25
3GS8|1|C|A|26
3GS8|1|C|C|27
*
3GS8|1|D|G|35
3GS8|1|D|G|36
3GS8|1|D|U|37
3GS8|1|D|A|38
3GS8|1|D|C|39
3GS8|1|D|A|40
3GS8|1|D|U|41
3GS8|1|D|U|42
3GS8|1|D|A|43
3GS8|1|D|C|44
3GS8|1|D|C|45
Current chains
- Chain C
- RNA (5'-R(P*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3')
- Chain D
- RNA (5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C)-3')
Nearby chains
- Chain A
- RNA (5'-R(*UP*CP*CP*CP*AP*GP*UP*CP*CP*AP*CP*CP*GP*U)-3')
- Chain B
- RNA (5'-R(*CP*GP*GP*UP*GP*AP*GP*AP*AP*GP*GP*G)-3')
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