IL_3GX6_001

3D structure

PDB id

3GX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese chloride

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGGAG*CGACGAAA

Length

13 nucleotides

Bulged bases

3GX6|1|A|C|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3GX6_001 not in the Motif Atlas

Geometric match to IL_5G4T_002

Geometric discrepancy: 0.1432

The information below is about IL_5G4T_002

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

3GX6|1|A|U|17
3GX6|1|A|G|18
3GX6|1|A|G|19
3GX6|1|A|A|20
3GX6|1|A|G|21
*
3GX6|1|A|C|31
3GX6|1|A|G|32
3GX6|1|A|A|33
3GX6|1|A|C|34
3GX6|1|A|G|35
3GX6|1|A|A|36
3GX6|1|A|A|37
3GX6|1|A|A|38

Current chains

Chain A

RNA (94-MER)

Nearby chains