IL_90775.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7	break		8		9		10		11		12	1-12	2-11	4-11	5-10	6-9	7-8
1	IL_7JRS_003	7JRS	0.1960	1	Kink-turn	B	RNA 3D nanocage	C	12	G	13	A	14	G	16	A	17	A	18	C	19	*	G	120	G	121	G	122	A	123	G	124	cWW	ntsS		tHS	tHS	cWW
2	IL_4KQY_002	4KQY	0.2045	1	Kink-turn	A	SAM-I riboswitch	C	31	G	32	A	33	G	35	A	36	A	37	G	38	*	C	17	A	18	G	19	A	20	G	21	cWW	tsS	ntSH	ntHS		cWW
3	IL_5Y7M_008	5Y7M	0.1682	1	Kink-turn	D	RNA (52-MER)	A	17	G	18	A	19	G	21	A	22	U	23	C	24	*	G	29	G	30	G	31	A	32	U	33	cWW	tsS	tSH	ntHS	ntHS	cWW
4	IL_7JRS_002	7JRS	0.1419	1	Kink-turn	A	RNA 3D nanocage	C	77	G	78	A	79	G	81	A	82	A	83	C	84	*	G	55	G	56	G	57	A	58	G	59	cWW	ntsS	tSH	tHS	tHS	cWW
5	IL_7JRR_001	7JRR	0.1435	1	Kink-turn	A	RNA (50-MER)	C	23	G	24	A	25	G	27	A	28	A	29	C	30	*	G	5	G	6	G	7	A	8	G	9	cWW	ntsS	tSH	tHS	tHS	cWW
6	IL_4BW0_001	4BW0	0.1879	1	Kink-turn	A	HMKT-7	C	16	G	17	A	18	G	20	A	21	A	22	C	23	*	G	3	G	4	G	5	A	6	G	7	cWW	ntsS	tSH	tHS	tHS	cWW
7	IL_4C4W_002	4C4W	0.2053	1	Kink-turn	H	TSKT-23	U	26	G	27	A	28	G	30	A	31	C	32	C	33	*	G	3	C	4	A	5	A	6	G	7	cWW	ntsS	tSH	tHS	ncBW	cWW
8	IL_7JRS_006	7JRS	0.1717	1	Kink-turn	B	RNA 3D nanocage	C	77	G	78	A	79	G	81	A	82	A	83	C	84	*	G	55	G	56	G	57	A	58	G	59	ncWW	ntsS	tSH	tHS	tHS	cWW
9	IL_7JRS_007	7JRS	0.1599	1	Kink-turn	A	RNA 3D nanocage	C	12	G	13	A	14	G	16	A	17	A	18	C	19	*	G	120	G	121	G	122	A	123	G	124	cWW	ntsS	tSH	tHS	tHS	cWW
10	IL_6Q8U_001	6Q8U	0.1370	1	Kink-turn	A+B	RNA (21-mer)	C	4	G	5	A	6	G	8	6MZ	9	A	10	C	11	*	G	14	G	15	G	16	A	17	G	18	cWW	ntsS	tSH	ntHS	tHS	cWW
11	IL_6Q8U_002	6Q8U	0.1304	1	Kink-turn	B+A	RNA (21-mer)	C	4	G	5	A	6	G	8	6MZ	9	A	10	C	11	*	G	14	G	15	G	16	A	17	G	18	cWW	ntsS	tSH	ntHS	tHS	cWW
12	IL_5FJ4_002	5FJ4	0.1475	1	Kink-turn	H	HMKT-7	C	26	G	27	A	28	G	30	A	31	A	32	C	33	*	G	3	G	4	G	5	A	6	G	7	cWW	ntsS	tSH	tHS	tHS	cWW
13	IL_9E6Q_034	9E6Q	0.1258	1		1	LSU rRNA	C	1049	G	1050	U	1051	G	1053	A	1054	A	1055	G	1056	*	C	961	G	962	G	963	A	964	G	965	cWW		tSH	tHS	tHS	cWW
14	IL_6Q8V_001	6Q8V	0.0941	1	Kink-turn	A	RNA (19-mer)	C	3	G	4	A	5	G	7	6MZ	8	A	9	C	10	*	G	13	G	14	G	15	A	16	G	17	cWW	ntsS	tSH	tHS	tHS	cWW
15	IL_5G4T_002	5G4T	0.0000	1	Kink-turn	A+B	HMKT-7	C	3	G	4	A	5	G	7	A	8	A	9	C	10	*	G	13	G	14	G	15	A	16	G	17	cWW	ntsS	tSH	tHS	tHS	cWW
16	IL_5FJC_002	5FJC	0.1170	1	Kink-turn	A	SAM-I riboswitch	C	31	G	32	A	33\|\|A	G	35	A	36	A	37	C	38	*	G	17	G	18	G	19	A	20	G	21	cWW	tsS	tSH	tHS	tHS	cWW
17	IL_3U4M_004	3U4M	0.1365	1	Kink-turn	B	LSU rRNA	C	2129	U	2130	G	2131	G	2133	A	2134	A	2135	C	2136	*	G	2155	G	2156	G	2157	A	2158	G	2159	cWW	tsS	tSH	tHS	tHS	cWW
18	IL_4WF9_046	4WF9	0.1907	1	Kink-turn	X	LSU rRNA	C	1246	G	1247	U	1248	G	1250	A	1251	A	1252	G	1253	*	U	1272	G	1273	G	1274	A	1275	G	1276	cWW			ntHS	tHS	cWW
19	IL_7A0S_043	7A0S	0.1904	1	Kink-turn	X	LSU rRNA	C	1221	G	1222	G	1223	G	1225	A	1226	A	1227	G	1228	*	U	1247	G	1248	G	1249	A	1250	G	1251	cWW	ntsS	tSH	ntHS	tHS	cWW
20	IL_7EAG_003	7EAG	0.1587	1	Kink-turn	D+C	RNA (19-mer)	C	3	U	4	A	5	G	7	A	8	A	9	G	10	*	U	13	G	14	G	15	A	16	G	17	cWW		ntSH	ntHS	tHS	cWW
21	IL_7EAG_002	7EAG	0.1738	1	Kink-turn	C+D	RNA (19-mer)	C	3	U	4	A	5	G	7	A	8	A	9	G	10	*	U	13	G	14	G	15	A	16	G	17	cWW	ntsS	tSH	tHS	tHS	cWW
22	IL_4V9F_048	4V9F	0.1499	1	Kink-turn	0	LSU rRNA	G	1312	A	1313	U	1314	G	1316	A	1317	A	1318	G	1319	*	U	1338	G	1339	G	1340	A	1341	C	1342	cWW	ntsS	tSH	tHS	tHS	cWW
23	IL_8B0X_107	8B0X	0.1385	1	Kink-turn (H)	a	LSU rRNA	C	1210	U	1211	G	1212	G	1214	A	1215	A	1216	G	1217	*	U	1236	G	1237	G	1238	A	1239	G	1240	cWW	tsS	tSH	tHS	tHS	cWW
24	IL_9DFE_046	9DFE	0.1406	1	Kink-turn	1A	LSU rRNA	C	1208	G	1209	A	1210	G	1212	A	1213	A	1214	G	1215	*	U	1234	G	1235	G	1236	A	1237	G	1238	cWW	ntsS	tSH	tHS	tHS	cWW
25	IL_9E6Q_050	9E6Q	0.1565	1	Kink-turn (H)	1	LSU rRNA	G	1335	G	1336	C	1337	G	1339	A	1340	A	1341	G	1342	*	U	1361	G	1362	G	1363	A	1364	C	1365	cWW	ntsS	tSH	tHS	tHS	cWW
26	IL_8GLP_086	8GLP	0.1670	1	Kink-turn (H)	L5	LSU rRNA	C	2302	C	2303	U	2304	G	2306	A	2307	A	2308	G	2309	*	U	2329	G	2330	G	2331	A	2332	G	2333	cWW	tsS	tSH	tHS	tHS	cWW
27	IL_9AXU_055	9AXU	0.2188	1	Kink-turn (H)	2	LSU rRNA	U	1422	G	1423	A	1424	G	1426	A	1427	A	1428	G	1429	*	U	1449	C	1450	G	1451	A	1452	A	1453	cWW	tsS	tSH	tHS	tHS	cWW
28	IL_8OI5_060	8OI5	0.2315	1	Kink-turn (H)	1	LSU rRNA	U	1384	G	1385	A	1386	G	1388	A	1389	A	1390	G	1391	*	U	1411	C	1412	G	1413	A	1414	A	1415	cWW	tsS	tSH	tHS	tHS	cWW
29	IL_8P9A_287	8P9A	0.2215	1	Kink-turn	AR	LSU rRNA	U	1388	G	1389	A	1390	G	1392	A	1393	A	1394	G	1395	*	U	1415	C	1416	G	1417	A	1418	A	1419	cWW	tsS	tSH	tHS	tHS	cWW
30	IL_3V7E_006	3V7E	0.1839	1	Kink-turn (H)	D	SAM-I riboswitch	C	231	G	232	A	233	G	235	A	236	A	237	A	238	*	U	217	G	218	G	219	A	220	G	221	cWW	ntsS	tSH		tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAGAAC*GGGAG	9
UGACGAAG*UCGAA	3
CGAAGAC*GGGAG	2
CUAUGAAG*UGGAG	2
CGACGAAG*CAGAG	1
AGACGAUC*GGGAU	1
UGAUGACC*GCAAG	1
CGAAG(6MZ)AC*GGGAG	1
CGUAGAAG*CGGAG	1
CUGUGAAC*GGGAG	1
CGUUGAAG*UGGAG	1
CGGAGAAG*UGGAG	1
GAUGGAAG*UGGAC	1
CUGUGAAG*UGGAG	1
CGAUGAAG*UGGAG	1
GGCAGAAG*UGGAC	1
CCUUGAAG*UGGAG	1
CGAUGAAA*UGGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAGAA*GGA	9
GAAG(6MZ)A*GGA	3
GACGAA*CGA	3
UGUGAA*GGA	2
UAUGAA*GGA	2
GAUGAA*GGA	2
GACGAA*AGA	1
GACGAU*GGA	1
GAUGAC*CAA	1
GUAGAA*GGA	1
GUUGAA*GGA	1
GGAGAA*GGA	1
AUGGAA*GGA	1
GCAGAA*GGA	1
CUUGAA*GGA	1

Release history

Release	4.1
Date	2025-09-10
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_90775.2 Version IL_90775.2 of this group appears in releases 4.1 to 4.1 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_90775.2 Version IL_90775.2 of this group appears in releases 4.1 to 4.1

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Csv

Json