IL_3HAY_001

3D structure

PDB id

3HAY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a substrate-bound full H/ACA RNP from Pyrococcus furiosus

Experimental method

X-RAY DIFFRACTION

Resolution

4.99 Å

Loop

Sequence

GAG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3HAY_001 not in the Motif Atlas

Geometric match to IL_6IA2_003

Geometric discrepancy: 0.1767

The information below is about IL_6IA2_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

3HAY|1|E|G|12
3HAY|1|E|A|13
3HAY|1|E|G|14
*
3HAY|1|F|C|10
3HAY|1|F|U|11
3HAY|1|F|C|12

Current chains

Chain E

H/ACA RNA

Chain F

5'-R(*AP*UP*AP*AP*UP*UP*(FHU)P*GP*AP*CP*UP*CP*AP*A)-3'

Nearby chains

Chain A

Probable tRNA pseudouridine synthase B