IL_3HL2_001

3D structure

PDB id

3HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the human SepSecS-tRNASec complex

Experimental method

X-RAY DIFFRACTION

Resolution

2.81 Å

Loop

Sequence

GGA*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3HL2_001 not in the Motif Atlas

Geometric match to IL_5Y85_006

Geometric discrepancy: 0.1796

The information below is about IL_5Y85_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

3HL2|1|E|G|5||A|A
3HL2|1|E|G|5||A|B
3HL2|1|E|A|5||A|C
*
3HL2|1|E|U|67||A|A
3HL2|1|E|U|67||A|B
3HL2|1|E|C|68||A

Current chains

Chain E

tRNASec

Nearby chains

Chain B

O-phosphoseryl-tRNA(Sec) selenium transferase