3HL2 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3HL2_001 | 1/E/15:20A | tRNA D-loop | homologous HL_3RG5_005 HL_18141.2 | |
| HL_3HL2_003 | 1/E/53:61 | T-loop with 2 stacked bulged bases | homologous HL_3RG5_008 HL_33597.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3HL2_002 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3HL2_002 | 1/E/5C:7, 1/E/65:67A | Isolated non-canonical cWW pair | geometric IL_3BNT_001 IL_71625.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3HL2_001 | Isolated non-canonical cWW pair | ||
| IL_3HL2_003 | No text annotation | ||
| IL_3HL2_004 | Isolated cWH basepair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_3HL2_001 | 1/E/7:10, 1/E/25:26, 1/E/44:46, 1/E/48:50, 1/E/64:65 | No text annotation | homologous J5_8G9Z_001 J5_22280.1 |
Problematic loops
No problematic loops
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