IL_3I55_012

3D structure

PDB id

3I55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3I55_012 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0666

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3I55|1|0|C|290
3I55|1|0|C|291
3I55|1|0|G|292
3I55|1|0|A|293
3I55|1|0|C|294
3I55|1|0|C|295
3I55|1|0|G|296
*
3I55|1|0|C|355
3I55|1|0|C|356
3I55|1|0|A|357
3I55|1|0|G|358
3I55|1|0|U|359
3I55|1|0|A|360
3I55|1|0|C|361
3I55|1|0|G|362

Current chains

Chain 0

23S ribosomal RNA

Nearby chains