IL_3I55_019

3D structure

PDB id

3I55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

UGACCG*CCAGUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3I55_019 not in the Motif Atlas

Geometric match to IL_4V9F_019

Geometric discrepancy: 0.0675

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

3I55|1|0|U|567
3I55|1|0|G|568
3I55|1|0|A|569
3I55|1|0|C|570
3I55|1|0|C|571
3I55|1|0|G|572
*
3I55|1|0|C|585
3I55|1|0|C|586
3I55|1|0|A|587
3I55|1|0|G|588
3I55|1|0|U|589
3I55|1|0|A|590
3I55|1|0|A|591

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L30P