IL_3I55_056

3D structure

PDB id

3I55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

CCAACU*ACGAACG

Length

13 nucleotides

Bulged bases

3I55|1|0|C|1617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3I55_056 not in the Motif Atlas

Homologous match to IL_4V9F_057

Geometric discrepancy: 0.0592

The information below is about IL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34822.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

3I55|1|0|C|1578
3I55|1|0|C|1579
3I55|1|0|A|1580
3I55|1|0|A|1581
3I55|1|0|C|1582
3I55|1|0|U|1583
*
3I55|1|0|A|1612
3I55|1|0|C|1613
3I55|1|0|G|1614
3I55|1|0|A|1615
3I55|1|0|A|1616
3I55|1|0|C|1617
3I55|1|0|G|1618

Current chains

Chain 0

23S ribosomal RNA

Nearby chains