IL_3I56_012

3D structure

PDB id

3I56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Triacetyloleandomcyin Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3I56_012 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0516

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3I56|1|0|C|290
3I56|1|0|C|291
3I56|1|0|G|292
3I56|1|0|A|293
3I56|1|0|C|294
3I56|1|0|C|295
3I56|1|0|G|296
*
3I56|1|0|C|355
3I56|1|0|C|356
3I56|1|0|A|357
3I56|1|0|G|358
3I56|1|0|U|359
3I56|1|0|A|360
3I56|1|0|C|361
3I56|1|0|G|362

Current chains

Chain 0

23S ribosomal RNA

Nearby chains