IL_3I56_070

3D structure

PDB id

3I56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Triacetyloleandomcyin Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

3I56|1|0|G|1979, 3I56|1|0|U|1985, 3I56|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3I56_070 not in the Motif Atlas

Homologous match to IL_4V9F_071

Geometric discrepancy: 0.0466

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

3I56|1|0|C|1975
3I56|1|0|G|1976
3I56|1|0|U|1977
3I56|1|0|A|1978
3I56|1|0|G|1979
3I56|1|0|U|1980
3I56|1|0|A|1981
3I56|1|0|C|1982
3I56|1|0|C|1983
3I56|1|0|U|1984
3I56|1|0|U|1985
3I56|1|0|G|1986
*
3I56|1|0|C|2002
3I56|1|0|U|2003
3I56|1|0|U|2004
3I56|1|0|G|2005

Current chains

Chain 0

23S ribosomal RNA

Nearby chains