IL_3IGI_006

3D structure

PDB id

3IGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

AUAUGAGG*UAAAU

Length

13 nucleotides

Bulged bases

3IGI|1|A|U|152, 3IGI|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_77045.1

Basepair signature

cWW-L-tSW-L-tHW-cWW-L

Number of instances in this motif group

1

Unit IDs

3IGI|1|A|A|149
3IGI|1|A|U|150
3IGI|1|A|A|151
3IGI|1|A|U|152
3IGI|1|A|G|153
3IGI|1|A|A|154
3IGI|1|A|G|155
3IGI|1|A|G|156
*
3IGI|1|A|U|221
3IGI|1|A|A|222
3IGI|1|A|A|223
3IGI|1|A|A|224
3IGI|1|A|U|225

Current chains

Chain A

Group IIC intron

Nearby chains

Chain B

5'-R(*CP*GP*CP*UP*CP*UP*AP*CP*UP*CP*UP*AP*U)-3'