3IGI Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3IGI_001 | 1/A/30:38 | T-loop with 2 stacked bulged bases HL_28252.6 | ||
| HL_3IGI_002 | 1/A/47:61 | Pseudoknot geometry with G-bulge HL_73183.1 | ||
| HL_3IGI_003 | 1/A/89:94 | GNRA HL_37824.7 | ||
| HL_3IGI_004 | 1/A/135:141 | GNRA related HL_04783.2 | ||
| HL_3IGI_005 | 1/A/178:187 | Pseudoknot geometry HL_93324.4 | ||
| HL_3IGI_006 | 1/A/274:279 | GNRA HL_37824.7 | ||
| HL_3IGI_010 | 1/A/305:314 | No text annotation HL_41464.2 | ||
| HL_3IGI_008 | 1/A/338:343 | UNCG HL_34617.5 | ||
| HL_3IGI_009 | 1/A/368:373 | Other HL HL_22584.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3IGI_007 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3IGI_001 | 1/A/10:14, 1/A/257:262 | No text annotation IL_99498.1 | ||
| IL_3IGI_002 | 1/A/70:74, 1/A/113:117 | Triple sheared IL_50730.2 | ||
| IL_3IGI_003 | 1/A/76:79, 1/A/103:111 | No text annotation IL_89312.1 | ||
| IL_3IGI_004 | 1/A/82:84, 1/A/99:100 | Single bulged G IL_00225.13 | ||
| IL_3IGI_005 | 1/A/128:129, 1/A/234:238 | Multiple bulged bases IL_26685.1 | ||
| IL_3IGI_006 | 1/A/149:156, 1/A/221:225 | Kink-turn IL_77045.1 | ||
| IL_3IGI_015 | 1/A/158:163, 1/A/214:219 | No text annotation IL_82292.1 | ||
| IL_3IGI_008 | 1/A/168:169, 1/A/197:209 | Pseudoknot IL_53787.1 | ||
| IL_3IGI_009 | 1/A/172:175, 1/A/190:194 | UAA/GAN related IL_77691.5 | ||
| IL_3IGI_010 | 1/A/267:271, 1/A/282:286 | No text annotation IL_96788.1 | ||
| IL_3IGI_011 | 1/A/296:303, 1/A/316:321 | 8x6 Sarcin-Ricin with inserted A; G-bulge IL_61286.1 | ||
| IL_3IGI_012 | 1/A/332:335, 1/A/346:350 | Receptor of 11-nt loop-receptor motif IL_67767.4 | ||
| IL_3IGI_013 | 1/A/365:366, 1/A/375:378 | Multiple bulged bases IL_42626.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3IGI_014 | No text annotation | ||
| IL_3IGI_007 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3IGI_001 | 1/A/133:135, 1/A/141:145, 1/A/229:230 | No text annotation J3_14360.1 | ||
| J5_3IGI_001 | 1/A/24:28, 1/A/40:43, 1/A/65:68, 1/A/119:123, 1/A/243:247 | No text annotation J5_71312.1 |
Problematic loops
No problematic loops
Coloring options: