IL_3IGI_011

3D structure

PDB id

3IGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CAUAGUAC*GGAAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

8x6 Sarcin-Ricin with inserted A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_61286.1

Basepair signature

cWW-L-R-L-R-L-tWH-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

3IGI|1|A|C|296
3IGI|1|A|A|297
3IGI|1|A|U|298
3IGI|1|A|A|299
3IGI|1|A|G|300
3IGI|1|A|U|301
3IGI|1|A|A|302
3IGI|1|A|C|303
*
3IGI|1|A|G|316
3IGI|1|A|G|317
3IGI|1|A|A|318
3IGI|1|A|A|319
3IGI|1|A|G|320
3IGI|1|A|G|321

Current chains

Chain A

Group IIC intron

Nearby chains