IL_3IIN_007

3D structure

PDB id

3IIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Plasticity of the kink turn structural motif

Experimental method

X-RAY DIFFRACTION

Resolution

4.18 Å

Loop

Sequence

GCAG*CUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCAG,CUGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3IIN_007 not in the Motif Atlas

Geometric match to IL_7LYF_005

Geometric discrepancy: 0.258

The information below is about IL_7LYF_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

7

Unit IDs

3IIN|1|B|G|104
3IIN|1|B|C|105
3IIN|1|B|A|106
3IIN|1|B|G|107
*
3IIN|1|B|C|112
3IIN|1|B|U|113
3IIN|1|B|G|114
3IIN|1|B|C|115

Current chains

Chain B

Group I intron

Nearby chains

Chain A

U1 small nuclear ribonucleoprotein A