Motif IL_25872.1 Version IL_25872.1 of this group appears in releases 3.89 to 3.89

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8	1-8	2-7	2-8	3-6	4-5
1	IL_8C3A_403	8C3A	0.3187	0	CM	SSU rRNA	C	147	C	148	G	149	U	150	*	A	160	G	161	A	162	G	163	cWW	ncWW		cWH	cWW
2	IL_7R9F_001	7R9F	0.2411	0	B	RNA (18-mer)	C	5	G	6	G	7	G	8	*	C	5\|\|\|\|8_555	G	6\|\|\|\|8_555	G	7\|\|\|\|8_555	G	8\|\|\|\|8_555	cWW				cWW
3	IL_1CSL_001	1CSL	0.0578	1	A+B	RNA (13-mer) + RNA (15-mer)	G	46	G	47	G	48	C	49	*	G	70	G	71	A	73	C	74	cWW	cWW		cWH	cWW
4	IL_1DUQ_001	1DUQ	0.0000	1	A+B	THE REV BINDING ELEMENT	G	104	G	105	G	106	C	107	*	G	123	G	124	A	126	C	127	cWW	cWW		cWH	cWW
5	IL_7WIE_001	7WIE	0.2270	0	V	THF-II riboswitch (folE RNA)	G	49	A	50	G	51	A	52	*	U	10	G	11	G	12	U	13	cWW	cWW		cWH	cWW
6	IL_7LYF_005	7LYF	0.2547	0	A	Dengue virus SLA	U	46	G	47	G	48	A	49	*	U	83	C	84	A	85	A	86	cWW	ncWW		ncWW	cWW
7	IL_5TBW_504	5TBW	0.2742	0	1	LSU rRNA	A	3163	C	3164	A	3165	C	3166	*	G	3284	C	3285	G	3286	U	3287	ncWW		ncWW	ncWWa	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGGC*GGUAC	2
CCGU*AGAG	1
CGGG*CGGG	1
GAGA*UGGU	1
UGGA*UCAA	1
ACAC*GCGU	1

Non-Watson-Crick part of the motif

Sequence	Counts
GG*GUA	2
CG*GA	1
GG*GG	1
AG*GG	1
GG*CA	1
CA*CG	1

Release history

Release	3.89
Date	2024-10-09
Status	New id, > 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (7)
Basepair signature: cWW-cWW-cWH-cWW
Heat map statistics: Min 0.06 | Avg 0.23 | Max 0.33

Help

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/package.js

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corejmol.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__549327136093687__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__549327136093687__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://rna.bgsu.edu/rna3dhub/motif/view/IL_25872.1","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__549327136093687__","codePath":"https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"549327136093687","bgcolor":"white" }

setting document base to "https://rna.bgsu.edu/rna3dhub/motif/view/IL_25872.1"

Jmol Version: 14.4.4_2016.04.25 2016-04-26 17:41

java.vendor: Java2Script (HTML5)

java.version: 2016-04-21 14:47:41 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corescript.z.js

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__549327136093687__ ready

script 1 started

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/coretext.z.js

Script completed

Jmol script terminated

script 2 started