Motif IL_25872.1 Version IL_25872.1 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 2-8 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8C3A_403 | 8C3A | 0.3187 | 0 | CM | SSU rRNA | C | 147 | C | 148 | G | 149 | U | 150 | * | A | 160 | G | 161 | A | 162 | G | 163 | cWW | ncWW | cWH | cWW | |
| 2 | IL_7R9F_001 | 7R9F | 0.2411 | 0 | B | RNA (18-mer) | C | 5 | G | 6 | G | 7 | G | 8 | * | C | 5||||8_555 | G | 6||||8_555 | G | 7||||8_555 | G | 8||||8_555 | cWW | cWW | |||
| 3 | IL_1CSL_001 | 1CSL | 0.0578 | 1 | A+B | RNA (13-mer) + RNA (15-mer) | G | 46 | G | 47 | G | 48 | C | 49 | * | G | 70 | G | 71 | A | 73 | C | 74 | cWW | cWW | cWH | cWW | |
| 4 | IL_1DUQ_001 | 1DUQ | 0.0000 | 1 | A+B | THE REV BINDING ELEMENT | G | 104 | G | 105 | G | 106 | C | 107 | * | G | 123 | G | 124 | A | 126 | C | 127 | cWW | cWW | cWH | cWW | |
| 5 | IL_7WIE_001 | 7WIE | 0.2270 | 0 | V | THF-II riboswitch (folE RNA) | G | 49 | A | 50 | G | 51 | A | 52 | * | U | 10 | G | 11 | G | 12 | U | 13 | cWW | cWW | cWH | cWW | |
| 6 | IL_7LYF_005 | 7LYF | 0.2547 | 0 | A | Dengue virus SLA | U | 46 | G | 47 | G | 48 | A | 49 | * | U | 83 | C | 84 | A | 85 | A | 86 | cWW | ncWW | ncWW | cWW | |
| 7 | IL_5TBW_504 | 5TBW | 0.2742 | 0 | 1 | LSU rRNA | A | 3163 | C | 3164 | A | 3165 | C | 3166 | * | G | 3284 | C | 3285 | G | 3286 | U | 3287 | ncWW | ncWW | ncWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGC*GGUAC | 2 |
| CCGU*AGAG | 1 |
| CGGG*CGGG | 1 |
| GAGA*UGGU | 1 |
| UGGA*UCAA | 1 |
| ACAC*GCGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GG*GUA | 2 |
| CG*GA | 1 |
| GG*GG | 1 |
| AG*GG | 1 |
| GG*CA | 1 |
| CA*CG | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-cWW-cWH-cWW
- Heat map statistics
- Min 0.06 | Avg 0.23 | Max 0.33
Coloring options: