IL_3IIN_008

3D structure

PDB id

3IIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Plasticity of the kink turn structural motif

Experimental method

X-RAY DIFFRACTION

Resolution

4.18 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3IIN_008 not in the Motif Atlas

Geometric match to IL_6DTD_003

Geometric discrepancy: 0.1975

The information below is about IL_6DTD_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

3IIN|1|B|G|128
3IIN|1|B|A|129
3IIN|1|B|G|130
*
3IIN|1|B|C|177
3IIN|1|B|C|178

Current chains

Chain B

Group I intron

Nearby chains

Chain C

DNA/RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*GP*AP*CP*C)-D(P*AP*GP*A)-R(P*CP*GP*GP*CP*C)-3')