IL_3IIN_010

3D structure

PDB id

3IIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Plasticity of the kink turn structural motif

Experimental method

X-RAY DIFFRACTION

Resolution

4.18 Å

Loop

Sequence

CUAAG*UAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3IIN_010 not in the Motif Atlas

Geometric match to IL_6AZ4_002

Geometric discrepancy: 0.127

The information below is about IL_6AZ4_002

Detailed Annotation

Receptor of 11-nt loop-receptor motif

Broad Annotation

Loop-receptor motif

Motif group

IL_87739.1

Basepair signature

cWW-tWH-cSH-cWW

Number of instances in this motif group

10

Unit IDs

3IIN|1|B|C|147
3IIN|1|B|U|148
3IIN|1|B|A|149
3IIN|1|B|A|150
3IIN|1|B|G|151
*
3IIN|1|B|U|160
3IIN|1|B|A|161
3IIN|1|B|U|162
3IIN|1|B|G|163

Current chains

Chain B

Group I intron

Nearby chains