IL_3IQN_005

3D structure

PDB id

3IQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Free-state structural transitions of the SAM-I riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AGC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3IQN_005 not in the Motif Atlas

Geometric match to IL_4WF9_055

Geometric discrepancy: 0.1794

The information below is about IL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

3IQN|1|A|A|70
3IQN|1|A|G|71
3IQN|1|A|C|72
*
3IQN|1|A|G|79
3IQN|1|A|U|80
3IQN|1|A|U|81

Current chains

Chain A

SAM-I riboswitch

Nearby chains