IL_3IWN_006

3D structure

PDB id

3IWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of a bacterial c-di-GMP riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAAC*GGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3IWN_006 not in the Motif Atlas

Geometric match to IL_3IGI_002

Geometric discrepancy: 0.2164

The information below is about IL_3IGI_002

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

3IWN|1|B|C|112
3IWN|1|B|A|113
3IWN|1|B|A|114
3IWN|1|B|A|115
3IWN|1|B|C|116
*
3IWN|1|B|G|131
3IWN|1|B|G|132
3IWN|1|B|A|133
3IWN|1|B|C|134
3IWN|1|B|G|135

Current chains

Chain B

C-di-GMP riboswitch

Nearby chains