IL_3IZ4_003

3D structure

PDB id

3IZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified E. coli tmRNA in the resume state with the tRNA-like domain in the ribosomal P site interacting with the SmpB

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CAAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3IZ4_003 not in the Motif Atlas

Geometric match to IL_5J7L_283

Geometric discrepancy: 0.2849

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3IZ4|1|A|C|37
3IZ4|1|A|A|38
3IZ4|1|A|A|39
3IZ4|1|A|G|40
*
3IZ4|1|A|C|329
3IZ4|1|A|G|330
3IZ4|1|A|A|331
3IZ4|1|A|G|332

Current chains

Chain A

Modified E. coli transfer-messenger RNA

Nearby chains