IL_3IZ4_013

3D structure

PDB id

3IZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified E. coli tmRNA in the resume state with the tRNA-like domain in the ribosomal P site interacting with the SmpB

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GUU*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3IZ4_013 not in the Motif Atlas

Geometric match to IL_5F5F_001

Geometric discrepancy: 0.1797

The information below is about IL_5F5F_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

3IZ4|1|A|G|263
3IZ4|1|A|U|264
3IZ4|1|A|U|265
*
3IZ4|1|A|A|296
3IZ4|1|A|G|297
3IZ4|1|A|C|298

Current chains

Chain A

Modified E. coli transfer-messenger RNA

Nearby chains