IL_3IZ4_014

3D structure

PDB id

3IZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified E. coli tmRNA in the resume state with the tRNA-like domain in the ribosomal P site interacting with the SmpB

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

AGUGG*CAGCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3IZ4_014 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3804

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

3IZ4|1|A|A|270
3IZ4|1|A|G|271
3IZ4|1|A|U|272
3IZ4|1|A|G|273
3IZ4|1|A|G|274
*
3IZ4|1|A|C|287
3IZ4|1|A|A|288
3IZ4|1|A|G|289
3IZ4|1|A|C|290
3IZ4|1|A|U|291

Current chains

Chain A

Modified E. coli transfer-messenger RNA

Nearby chains