Motif IL_05145.3 Version IL_05145.3 of this group appears in releases 3.87 to 3.87

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-8	2-9	3-7	3-8	3-9	4-7	5-6
1	IL_5TBW_121	5TBW	0.4624		1	LSU rRNA	C	3162	A	3163	C	3164	A	3165	C	3166	*	G	3284	C	3285	G	3286	U	3287	G	3288	ncWW		ncWW			ncWW	ncWWa	cWW
2	IL_7VYX_004	7VYX	0.4553	Partly complementary	C	sgRNA	U	37	U	38	A	39	U	40	C	41	*	G	21	G	22	A	23	U	24	G	25	ncWW		ncwW		ncwW		ncWWa	cWW
3	IL_4WF9_084	4WF9	0.4314	Other IL	X	LSU rRNA	G	2217	G	2218	C	2219	U	2220	U	2221	*	A	2122	A	2123	U	2124	U	2125	C	2126	cWW				ncWW		ncWW	cWW
4	IL_5BTM_001	5BTM	0.0000	Triple non-canonical cWW pairs	A	RNA (55-mer)	U	10	U	11	C	12	U	13	A	14	*	U	42	U	43	C	44	U	45	A	46	cWW	ncWW	cwW		ncWw		cwW	cWW
5	IL_8S95_002	8S95	0.2193	Triple non-canonical cWW pairs	C	Enterovirus 5' cloverleaf cis-acting replication element	C	101	C	102	U	103	U	104	G	105	*	C	84	U	85	C	86	C	87	G	88	cWW		ncwW		cWW		ncWw	cWW
6	IL_8VMB_003	8VMB	0.2023	Triple non-canonical cWW pairs	R	Enterovirus 5' cloverleaf cis-acting replication element	C	51	U	52	C	53	C	54	U	55	*	A	68	C	69	U	70	U	71	G	72	cWW		cwW		cWW		ncwW	cWW
7	IL_8VMA_004	8VMA	0.2043	Triple non-canonical cWW pairs	C	Enterovirus 5' cloverleaf cis-acting replication element	C	51	U	52	C	53	C	54	U	55	*	A	71	C	72	U	73	U	74	G	75	cWW		cwW		ncWW		ncWw	cWW
8	IL_8VM9_004	8VM9	0.2106	Triple non-canonical cWW pairs	R	Enterovirus 5' cloverleaf cis-acting replication element	C	68	U	69	U	70	U	71	G	72	*	C	48	U	49	C	50	U	51	G	52	cWW	ncWW	cwW		cWW		cWw	cWW
9	IL_8VM8_003	8VM8	0.2451	Triple non-canonical cWW pairs	R	Enterovirus 5' cloverleaf cis-acting replication element	C	54	U	55	C	56	U	57	G	58	*	C	74	U	75	U	76	U	77	G	78	cWW		cwW		cWW		cWw	cWW
10	IL_8DP3_002	8DP3	0.2051	Triple non-canonical cWW pairs	R	Enterovirus 5' cloverleaf cis-acting replication element	C	54	U	55	C	56	U	57	G	58	*	C	71	U	72	U	73	U	74	G	75	cWW		cwW	ncWW	cWW		cWw	cWW
11	IL_8SP9_002	8SP9	0.2380	Triple non-canonical cWW pairs	C	Enterovirus 5' cloverleaf cis-acting replication element	C	99	U	100	U	101	U	102	G	103	*	C	82	U	83	C	84	U	85	G	86	cWW		ncwW		ncWW		cWw	cWW
12	IL_4V88_422	4V88	0.3276		A6	SSU rRNA	C	708	C	709	U	710	U	711	G	712	*	C	726	U	727	U	728	G	729	G	730	cWW		ncWW		cwW		cWw	cWW
13	IL_8C3A_044	8C3A	0.4820		1	LSU rRNA	U	1037	U	1038	C	1039	U	1040	C	1041	*	G	1001	A	1002	U	1003	U	1004	A	1005	cWW		cwW		ncWS		cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUCCU*ACUUG	2
CUUUG*CUCUG	2
CUCUG*CUUUG	2
CACAC*GCGUG	1
UUAUC*GGAUG	1
GGCUU*AAUUC	1
UUCUA*UUCUA	1
CCUUG*CUCCG	1
CCUUG*CUUGG	1
UUCUC*GAUUA	1

Non-Watson-Crick part of the motif

Sequence	Counts
UCC*CUU	2
UUU*UCU	2
UCU*UUU	2
ACA*CGU	1
UAU*GAU	1
GCU*AUU	1
UCU*UCU	1
CUU*UCC	1
CUU*UUG	1
UCU*AUU	1

Release history

Release	3.87
Date	2024-08-14
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Triple non-canonical cWW pairs (8)
(3)
Other IL (1)
Partly complementary (1)
Basepair signature: cWW-cWW-cWW-cWW-cWW
Heat map statistics: Min 0.08 | Avg 0.32 | Max 0.63

Help

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/package.js

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corejmol.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__682702751324344__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__682702751324344__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://rna.bgsu.edu/rna3dhub/motif/view/IL_05145.3","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__682702751324344__","codePath":"https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"682702751324344","bgcolor":"white" }

setting document base to "https://rna.bgsu.edu/rna3dhub/motif/view/IL_05145.3"

Jmol Version: 14.4.4_2016.04.25 2016-04-26 17:41

java.vendor: Java2Script (HTML5)

java.version: 2016-04-21 14:47:41 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corescript.z.js

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__682702751324344__ ready

script 1 started

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/coretext.z.js

Script completed

Jmol script terminated

script 2 started