IL_3IZ4_017

3D structure

PDB id

3IZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified E. coli tmRNA in the resume state with the tRNA-like domain in the ribosomal P site interacting with the SmpB

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GUGG*CAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3IZ4_017 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.2949

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3IZ4|1|A|G|271
3IZ4|1|A|U|272
3IZ4|1|A|G|273
3IZ4|1|A|G|274
*
3IZ4|1|A|C|287
3IZ4|1|A|A|288
3IZ4|1|A|G|289
3IZ4|1|A|C|290

Current chains

Chain A

Modified E. coli transfer-messenger RNA

Nearby chains