IL_3J0D_004

3D structure

PDB id

3J0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

11.1 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0D_004 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.1119

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

3J0D|1|F|C|2652
3J0D|1|F|U|2653
3J0D|1|F|A|2654
3J0D|1|F|G|2655
3J0D|1|F|U|2656
3J0D|1|F|A|2657
3J0D|1|F|C|2658
*
3J0D|1|F|G|2663
3J0D|1|F|G|2664
3J0D|1|F|A|2665
3J0D|1|F|C|2666
3J0D|1|F|C|2667
3J0D|1|F|G|2668

Current chains

Chain F

ribosomal 23S RNA

Nearby chains