IL_3J0L_003

3D structure

PDB id

3J0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

3J0L|1|a|A|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0L_003 not in the Motif Atlas

Geometric match to IL_6D3P_004

Geometric discrepancy: 0.2298

The information below is about IL_6D3P_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

3J0L|1|a|C|552
3J0L|1|a|A|553
3J0L|1|a|U|554
*
3J0L|1|a|A|579
3J0L|1|a|G|580

Current chains

Chain a

40S ribosomal RNA fragment

Nearby chains

Chain L

Ribosomal protein S23

Chain X

Ribosomal protein S30