IL_3J0L_023

3D structure

PDB id

3J0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

3J0L|1|2|C|2197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0L_023 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.1561

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

3J0L|1|2|C|2196
3J0L|1|2|C|2197
3J0L|1|2|A|2198
3J0L|1|2|G|2199
*
3J0L|1|2|C|2245
3J0L|1|2|G|2246

Current chains

Chain 2

60S ribosomal RNA fragment

Nearby chains

Chain 8

60S ribosomal RNA fragment

Chain c

40S ribosomal RNA fragment