IL_3J0L_026

3D structure

PDB id

3J0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

3J0L|1|2|A|2207, 3J0L|1|2|A|2208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J0L|1|2|G|2206
3J0L|1|2|A|2207
3J0L|1|2|A|2208
3J0L|1|2|U|2209
3J0L|1|2|G|2210
*
3J0L|1|2|C|2235
3J0L|1|2|G|2236
3J0L|1|2|C|2237

Current chains

Chain 2

60S ribosomal RNA fragment

Nearby chains

Chain W

Transfer RNA; tRNA