IL_3J0L_029

3D structure

PDB id

3J0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

3J0L|1|4|A|2626

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0L_029 not in the Motif Atlas

Geometric match to IL_4V9F_079

Geometric discrepancy: 0.3252

The information below is about IL_4V9F_079

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

3J0L|1|4|G|2614
3J0L|1|4|G|2615
*
3J0L|1|4|C|2625
3J0L|1|4|A|2626
3J0L|1|4|C|2627

Current chains

Chain 4

60S ribosomal RNA fragment

Nearby chains