IL_3J0L_031

3D structure

PDB id

3J0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0L_031 not in the Motif Atlas

Homologous match to IL_8C3A_112

Geometric discrepancy: 0.514

The information below is about IL_8C3A_112

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

3J0L|1|7|U|2826
3J0L|1|7|U|2827
3J0L|1|7|G|2828
*
3J0L|1|7|U|2862
3J0L|1|7|G|2863

Current chains

Chain 7

60S ribosomal RNA fragment

Nearby chains

Chain J

Ribosomal protein L10

Chain Y

Transfer RNA; tRNA