IL_3J0L_040

3D structure

PDB id

3J0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GCG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0L_040 not in the Motif Atlas

Geometric match to IL_4V88_444

Geometric discrepancy: 0.1588

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3J0L|1|G|G|1435
3J0L|1|G|C|1436
3J0L|1|G|G|1437
*
3J0L|1|g|C|1145
3J0L|1|g|C|1146
3J0L|1|g|U|1147

Current chains

Chain G

40S ribosomal RNA fragment

Chain g

40S ribosomal RNA fragment

Nearby chains

Chain T

Ribosomal protein S5

Chain V

Transfer RNA; tRNA