IL_3J0P_011

3D structure

PDB id

3J0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

10.6 Å

Loop

Sequence

UAGUAAC*GGAACAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J0P|1|h|U|1622
3J0P|1|h|A|1623
3J0P|1|h|G|1624
3J0P|1|h|U|1625
3J0P|1|h|A|1626
3J0P|1|h|A|1627
3J0P|1|h|C|1628
*
3J0P|1|h|G|1697
3J0P|1|h|G|1698
3J0P|1|h|A|1699
3J0P|1|h|A|1700
3J0P|1|h|C|1701
3J0P|1|h|A|1702
3J0P|1|h|A|1703

Current chains

Chain h

40S ribosomal RNA fragment

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain L

Ribosomal protein S23