IL_3J0P_031

3D structure

PDB id

3J0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

10.6 Å

Loop

Sequence

UUGUG*UUUUUG

Length

11 nucleotides

Bulged bases

3J0P|1|7|U|2860

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J0P|1|7|U|2826
3J0P|1|7|U|2827
3J0P|1|7|G|2828
3J0P|1|7|U|2829
3J0P|1|7|G|2830
*
3J0P|1|7|U|2858
3J0P|1|7|U|2859
3J0P|1|7|U|2860
3J0P|1|7|U|2861
3J0P|1|7|U|2862
3J0P|1|7|G|2863

Current chains

Chain 7

60S ribosomal RNA fragment

Nearby chains

Chain Y

Transfer RNA; tRNA