IL_3J0Q_028

3D structure

PDB id

3J0Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

10.6 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J0Q_028 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1919

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

3J0Q|1|7|U|2835
3J0Q|1|7|C|2836
3J0Q|1|7|A|2837
3J0Q|1|7|A|2838
3J0Q|1|7|G|2839
*
3J0Q|1|7|C|2849
3J0Q|1|7|G|2850
3J0Q|1|7|A|2851
3J0Q|1|7|C|2852
3J0Q|1|7|A|2853

Current chains

Chain 7

60S ribosomal RNA fragment

Nearby chains

Chain J

Ribosomal protein L10