3D structure

PDB id
3J28 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Experimental method
ELECTRON MICROSCOPY
Resolution
12.9 Å

Loop

Sequence
CGAA*UG
Length
6 nucleotides
Bulged bases
3J28|1|N|G|64, 3J28|1|N|A|65
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J28_005 not in the Motif Atlas
Geometric match to IL_5J7L_005
Geometric discrepancy: 0.2488
The information below is about IL_5J7L_005
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_82107.4
Basepair signature
cWW-cWW
Number of instances in this motif group
30

Unit IDs

3J28|1|N|C|63
3J28|1|N|G|64
3J28|1|N|A|65
3J28|1|N|A|66
*
3J28|1|N|U|103
3J28|1|N|G|104

Current chains

Chain N
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1304 s