IL_3J28_005
3D structure
- PDB id
- 3J28 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.9 Å
Loop
- Sequence
- CGAA*UG
- Length
- 6 nucleotides
- Bulged bases
- 3J28|1|N|G|64, 3J28|1|N|A|65
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J28_005 not in the Motif Atlas
- Geometric match to IL_5J7L_005
- Geometric discrepancy: 0.2488
- The information below is about IL_5J7L_005
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.4
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
3J28|1|N|C|63
3J28|1|N|G|64
3J28|1|N|A|65
3J28|1|N|A|66
*
3J28|1|N|U|103
3J28|1|N|G|104
Current chains
- Chain N
- 16S rRNA
Nearby chains
No other chains within 10ÅColoring options: