IL_3J28_033

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

CGCAG*UCAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J28_033 not in the Motif Atlas

Homologous match to IL_5J7L_027

Geometric discrepancy: 0.1601

The information below is about IL_5J7L_027

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

3J28|1|N|C|580
3J28|1|N|G|581
3J28|1|N|C|582
3J28|1|N|A|583
3J28|1|N|G|584
*
3J28|1|N|U|757
3J28|1|N|C|758
3J28|1|N|A|759
3J28|1|N|G|760
3J28|1|N|G|761

Current chains

Chain N

16S rRNA

Nearby chains