IL_3J28_046

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

AGG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J28_046 not in the Motif Atlas

Geometric match to IL_3R1D_012

Geometric discrepancy: 0.3344

The information below is about IL_3R1D_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08424.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

68

Unit IDs

3J28|1|N|A|831
3J28|1|N|G|832
3J28|1|N|G|833
*
3J28|1|N|C|853
3J28|1|N|U|854
3J28|1|N|U|855

Current chains

Chain N

16S rRNA

Nearby chains