IL_3J28_051

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

UGG*CACA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J28_051 not in the Motif Atlas

Geometric match to IL_5B2P_002

Geometric discrepancy: 0.3984

The information below is about IL_5B2P_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

3J28|1|N|U|952
3J28|1|N|G|953
3J28|1|N|G|954
*
3J28|1|N|C|1226
3J28|1|N|A|1227
3J28|1|N|C|1228
3J28|1|N|A|1229

Current chains

Chain N

16S rRNA

Nearby chains