IL_3J28_067

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J28_067 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.3432

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

3J28|1|N|C|1259
3J28|1|N|G|1260
3J28|1|N|A|1261
3J28|1|N|C|1262
3J28|1|N|C|1263
*
3J28|1|N|G|1272
3J28|1|N|C|1273
3J28|1|N|A|1274
3J28|1|N|A|1275
3J28|1|N|G|1276

Current chains

Chain N

16S rRNA

Nearby chains