IL_3J28_069

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J28_069 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.2021

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

3J28|1|N|C|1303
3J28|1|N|G|1304
3J28|1|N|G|1305
3J28|1|N|A|1306
3J28|1|N|U|1307
3J28|1|N|U|1308
*
3J28|1|N|A|1329
3J28|1|N|U|1330
3J28|1|N|G|1331
3J28|1|N|A|1332
3J28|1|N|A|1333
3J28|1|N|G|1334

Current chains

Chain N

16S rRNA

Nearby chains