IL_3J28_080

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

UUGA*UAA

Length

7 nucleotides

Bulged bases

3J28|1|N|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J28_080 not in the Motif Atlas

Geometric match to IL_7A0S_042

Geometric discrepancy: 0.2992

The information below is about IL_7A0S_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3J28|1|N|U|29
3J28|1|N|U|30
3J28|1|N|G|31
3J28|1|N|A|32
*
3J28|1|N|U|552
3J28|1|N|A|553
3J28|1|N|A|554

Current chains

Chain N

16S rRNA

Nearby chains