IL_3J29_024

3D structure

PDB id

3J29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

3J29|1|N|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J29_024 not in the Motif Atlas

Geometric match to IL_4LFB_016

Geometric discrepancy: 0.3797

The information below is about IL_4LFB_016

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

3J29|1|N|U|375
3J29|1|N|G|376
*
3J29|1|N|U|387
3J29|1|N|G|388
3J29|1|N|A|389

Current chains

Chain N

16S rRNA

Nearby chains